ToXgene

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Platform requirements for ToXgene

Operating systems: all Java platforms Java tools:

• a JRE compatible with Java 2
• the Xerces 2.5 libraries
• if using the Persistent Object Manager: PoBoy.

Installation instructions for ToXgene

1. Download and unzip/untar the file.
2. Set the following environment variables:
   TOXGENE_HOME: full path to the directory where you unzipped/untarred the package
   XERCES_HOME: full path to the directory where you copied the Xerces JAR file

3. Add the directory $(TOXGENE_HOME)/bin to your PATH variable.
4. To test your installation, simply run "toxgene" from the command line. You should get the following response:

   ToXgene 2.3 - (c) 2001 by University of Toronto and IBM Corporation

   Usage:	ToXgene <options> <template file> where possible options include ([default value]):
   -c	Check template only; do not generate files [false]
   -h	Print this message
   -v	Verbose mode [false]
   -w	Omit warning messages [false]
   -n	Add a new line after each element close tag [false]
   -t	Show elapsed time [false]
   -s <seed>	Specify an initial master random seed
   -i <path>	Specify a path where the input XML files for populating the tox-lists are located ["."]
   -d <path>	Specify a path where ToXgene should write the documents generated in the current session ["."]
   -o [p[f][[s]]]	Use a persistent object manager [false]:
   "p"	is the path where to store temporary files
   "f"	is the fraction of the memory used for buffering
   "s"	is the size (in kilobytes) of the memory buffers the default values are: p=".", f=0.5 and s=8KB"